BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022B01LP1|AL427855
(627 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1233 813 0.0
>3x_Contig1233
Length = 4604
Score = 813 bits (381), Expect = 0.0
Identities = 528/617 (85%), Gaps = 3/617 (0%)
Strand = Plus / Minus
Query: 12 agtaaacgttgcatggaacaagctgggacacggacttgggaacggcgttcaggtgtgatt 71
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 agtaaacgttgcatggtgct-gctgggacacggacttgggaacggcgttcaggtgtgatt 2605
Query: 72 waaatgagsttktkagaaatgggacgscgtagtattgakatgsgaatatatsgtttsgtt 131
|||| || | |||| ||||||| ||||||||||| ||| |||||||| |||| |||
Sbjct: 2604 ttg-tgagcttgtgagaattgggacgccgtagtattgagatgcgaatatatcgtttcgtt 2546
Query: 132 agaggcacgtccttktatkammtsktctkssttagaaggagtgtsaaatttcctgtagga 191
|||||||||||||| ||| | | ||| ||||||||||||| |||||||||||||||
Sbjct: 2545 agaggcacgtccttgtatgaaatcgtctgccttagaaggagtgtcaaatttcctgtagga 2486
Query: 192 maggtttstmsggssttsgacgtagcttttgcmatskgsscaktttgtaamcmctttttt 251
|||||| | || || |||||||||||||| || | || || |||| | |||| ||
Sbjct: 2485 aaggtttctacggccttcgacgtagcttttgcaatcggcccagttggtaaacactttgtt 2426
Query: 252 ttktastgmkstgtsmctacttctcaccgsatagaatgaggaagatgaaggtggtggtgg 311
| || || ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2425 tggtactgagctgtcactacttctcaccgcatagaatgaggaagatgaaggtggtggtgg 2366
Query: 312 tggcgctgccgctgctgctgctgcttttkagtggtaattmstatmkgakctktgactgtt 371
|||||||||||||||||||||||||||| |||||||||| ||| || || ||||||||
Sbjct: 2365 tggcgctgccgctgctgctgctgcttttgagtggtaattactataggagctgtgactgtt 2306
Query: 372 ktagggtgcttkgttttmattmkatttcttattkcctccktatttcccttmactttaccc 431
|||||||||| ||| | | | ||| || || ||||| || | ||| | ||| ||||
Sbjct: 2305 gtagggtgcttggttgtaagtagattgctgatggcctccgtagtgcccgtaactggaccc 2246
Query: 432 tgaactggatccagaatacgacctgtaggatttkgacgatktagatgggaatkaktktcc 491
||||||||||||||||||||||||||||||||| |||||| ||||||||||| | | |||
Sbjct: 2245 tgaactggatccagaatacgacctgtaggatttggacgatgtagatgggaatgagtgtcc 2186
Query: 492 tgakctactgctgctgtttgcaaatkctctakcttc-cgctggcgtatcgaatcgtttaa 550
||| |||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 2185 tgagctactgctgctgttggcaaatgctctagcttcgcgctggcgtatcgaatcgtttaa 2126
Query: 551 acttcgcgttcgagtaaccgtttactgattcttkacattcagaccatgaatcgaaaacac 610
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2125 acttcgcgttcgagtaaccgtttactgattcttgacattcagaccatgaatcgaaaacac 2066
Query: 611 caacgtttctgccattt 627
|||||||||||||||||
Sbjct: 2065 caacgtttctgccattt 2049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.48 0.727 1.39
Gapped
Lambda K H
1.48 0.727 1.39
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2204
Number of Sequences: 1807
Number of extensions: 2204
Number of successful extensions: 479
Number of sequences better than 1.0e-20: 1
length of query: 627
length of database: 10,358,551
effective HSP length: 15
effective length of query: 612
effective length of database: 10,331,446
effective search space: 6322844952
effective search space used: 6322844952
T: 0
A: 40
X1: 5 (10.7 bits)
X2: 14 (29.9 bits)
S1: 11 (23.9 bits)
S2: 47 (100.7 bits)